# Angular Boat Bio

#### Install with Bower
```sh
$ bower install git@git.vbio.top:ng/ng-boat-bio.git --save
```

#### Load the script files in your application
```html
<script src='bower_components/ng-boat-bio/dist/ng-boat-bio.js'></script>
```

#### Add the 'boat' and 'boat.bio' module as a dependency to your application module:
```js
// Add boat.bio as a dependency to your app
angular.module('App', ['boat.bio']);

// Inject Bio into your controller
angular.module('App').controller('MainCtrl', function($scope, Bio) {
  // ...
});

```

#### Bio methods

- randomSeq(len): 返回固定长度的随机序列.
- validator().divBy3(seq): 序列能否被 3 整除 return {status: true|false, msg: []}
- validator().orfClassify(seq, orfMsg='orfMsgEn'): return {status: true, msg: [], standardStart: standardStart, mid_stop: mid_stop} orfMsg为dict-msg.js里面的function name  为以后多语言版本作准备
- validator().linkerClassify(seq, linkerMsg='linkerMsgEn'): return {status: true, msg: []} linkerMsg为dict-msg.js里面的function name
- validator().vectorJudgment(feat, orfMsg='orfMsgEn'): 判断feat里面的orf, return {status: true, msg: []}
- stopCodonJudgment(feat, orfMsg='orfMsgEn'): 判断feat里面的orf是否需要切除stopCodon return {msg: msg, errorList: errorList, feat: feat, copyFeat: copyFeat, stopCodonIndexList: stopCodonIndexList},
                                                msg为orf的错误信息列表, errorList为需要切除stopCodon的orf列表['ORF #1', 'ORF #2'],
                                                feat为未切除stopCodon的feat, copyFeat为切除stopCodon的feat,
                                                stopCodonIndexList:要切除stopcodon的index的集合,
                                                stopCodonOrfList: 要切除stopcodon的orf集合

- reverseComplement(seq):返回反向互补序列,只适用于只有'ACTG'的序列